PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 507aa    MW: 53359.8 Da    PI: 4.707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000759.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11323368555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR++i +++ +L+el+P++      + +Ka++L + ++Y+k Lq
  Do000759.1 323 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 368
                 99***********************7.....59*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-12316372No hitNo description
SuperFamilySSF474597.59E-17316379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16320378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-9323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGSFADPFIP APAWPQDVVF TGTSWSGSDP ASLADSAGAY LAAAPDQDTE FHLLNGSSPA  60
LLNGNAKEIV SPVELHEQLL QAQLQDDVMQ GLNFEVDGAL MAGALGSVLS TPCAISLADS  120
GPVVCSSNDS SGSEQSGLPQ FLPGEQPVPV PAAWPSPFAQ IASLVGEETS QSFGFHAVSN  180
DDLLREACAA DGKKYPQLGN VPSAPLQLHN DIEFNTGKML SFAPGPGQQV NTNLEDLQIS  240
QKEFCGLHHL NLSSLVSGQL SSFNATGVAR NPKQSNGVSN GKNGLNAAPF MAQSEVPNGS  300
VIAGNGAPKT RIRARRGQAT DPHSIAERLR REKISDRMKN LQELVPNSNR TDKASMLDEI  360
IDYVKFLQLQ VKVLSMSRLG ATEAVVPLLT KSQTESSSGG LLLSPRSGRQ QAGGGSLLGQ  420
PELRDGAAFE QEVVQLMENN MTTAMQYLQS KGLCLMPIAL ASAISDQKGT NSGAADEDGA  480
GGEKHDAQEM LRGLKAFGGV REMRSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749561e-154EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0PREDICTED: uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-53LJRHL1-like 3